Allen Institute Logo

Allen Institute

System Engineer II, Scientific Systems

Posted 2 Months Ago
Be an Early Applicant
In-Office
Seattle, WA, USA
113K-140K Annually
Junior
In-Office
Seattle, WA, USA
113K-140K Annually
Junior
Manage a large Linux-based scientific computing environment, including servers, workstations, storage, cloud infrastructure, patching, cybersecurity agents, monitoring, lifecycle management, and performance scaling. Design and deploy infrastructure services, automate operations with shell or Python, develop system standards, and support highly available services. The role includes rotating evening and weekend on-call coverage, occasional additional hours, and local travel to data centers or other institute locations.
The summary above was generated by AI

System Engineer II, Scientific Systems

The Allen Institute accelerates science for a healthier world through large-scale research designed to answer some of the most complex questions in biology. Our multi-disciplinary teams generate foundational knowledge, tools, and data to understand how our brain, cells, and immune system work. We share our work openly so others can build on it, move faster, and ask bigger questions. We drive discovery forward and create new possibilities for improving human health.

The mission of the Administration team is to enable the people and science of the Allen Institute. We connect teams, steward resources, and build strong systems that give our accelerators the stability and flexibility to pursue ambitious questions, collaborate across disciplines, and share their work openly.

As a key member of the IT Infrastructure Team, you are an experienced Linux System Engineer who enjoys solving problems and building systems using a combination of creativity and technical rigor. This role will be involved with cloud-based integrations, server patching, cybersecurity management and designing and deploying IT infrastructure. You don't have to know everything (that's why you're on a team), but we do expect good judgement and a desire to learn.

The Allen Institute believes that team science significantly benefits from the participation of diverse voices, experiences and backgrounds. High-quality science can only be produced when it includes different perspectives. We are committed to increasing diversity across every team and encourage people from all backgrounds to apply for this role.

Essential Functions

  • Manage a Linux-based research environment with over 350 servers and workstations and 20 PB of storage
  • Help design, deploy, and upgrade IT infrastructure products and services supporting scientific computing
  • Engage in hardware and software lifecycle management
  • Manage patch deployment and troubleshooting on workstations and servers
  • Participate in the development of system standards, policies, and procedures
  • Manage scientific systems cybersecurity software agents and monitoring systems
  • Monitor system performance and plan for future scaling
  • Manage infrastructure resources in public cloud

Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management’s assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.

Required Education and Experience

  • Bachelor’s degree or equivalent combination of degree and experience required
  • At least one year of professional UNIX/Linux system administration experience
  • History of supporting highly available IT services in a 100+ server environment
  • Operational automation skills using shell or Python
  • Associate-level AWS certification (CloudOps Engineer or Solutions Architect)

Preferred Education and Experience

  • Four or more years of professional system administration experience preferred
  • Experience managing centralized storage systems such as Isilon, VAST Data, or NetApp
  • Familiarity with virtualization frameworks such as OpenStack and VMware
  • Experience using and managing Docker containers in a Kubernetes environment
  • Understanding of TCP/IP networking fundamentals
  • Familiarity with configuration management systems such as Salt and Ansible
  • Knowledge of high-performance computing (HPC) schedulers such as Slurm
  • Customer-focused mindset
  • Excellent communication and collaboration skills
  • Ability to balance competing priorities

Work Environment

  • Data Center

Physical Demands

  • Occasional lifting to 30 pounds
  • Fine motor movements in fingers/hands to operate computers and other office equipment;
  • Push/pull up to 50 lbs
  • Stooping, bending, crouching, reaching

Position Type/Expected Hours of Work

  • This is an essential job and expected to report for work regardless of weather and/or other conditions
  • Rotating evening and weekend on-call coverage
  • Occasional evening and weekend hours required
  • This role is currently able to work both remotely and onsite in a hybrid work environment. We are a Washington State employer, and the primary work location for all Allen Institute employees is 615 Westlake Ave N.; any remote work must be performed in Washington State.

Travel

  • Occasional local travel to alternate locations such as warehouse or data center or other Allen Institute locations

Annualized Salary Range

$112,950- $139,750*

Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.

Benefits

  • Employees (and their families) are eligible to enroll in benefits per eligibility rules outline in the Allen Institute’s Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute’s 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute’s benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.

It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities.

HQ

Allen Institute Seattle, Washington, USA Office

Seattle, WA, United States

Similar Jobs

15 Minutes Ago
In-Office or Remote
United States
110K-160K Annually
Expert/Leader
110K-160K Annually
Expert/Leader
Events • Food • Travel • Hospitality • Hotels & Resorts
Leads project management for full-service hotel development, conversion, adaptive reuse, room addition, and brand change projects. Reviews site plans, programming, architectural and engineering documents, construction submittals, and shop drawings; conducts construction inspections; evaluates compliance with brand standards, building codes, and life safety requirements; manages owners, consultants, and cross-functional stakeholders; forecasts project timelines, identifies risks, and resolves deficiencies. The role requires extensive hospitality construction experience, strong technical and communication skills, and travel up to 50%.
Top Skills: Bluebeam
33 Minutes Ago
Remote or Hybrid
Seattle, WA, USA
120K-257K Annually
Senior level
120K-257K Annually
Senior level
Artificial Intelligence • Fintech • Insurance • Marketing Tech • Software • Analytics
Lead a new AI-focused data science team accelerating insurance pricing program rollouts. Partner with pricing, delivery, and technology teams to identify AI opportunities; build evaluations for AI and agentic systems; define metrics, statistical tests, ground truth, and production experiments; measure value and risk; translate business needs into requirements; and prototype evaluation tools and AI applications. The role requires insurance pricing expertise, advanced statistics, strong Python and data science skills, modern LLM experience, and effective stakeholder communication.
Top Skills: Agentic AiExperimental DesignLarge Language Models (Llms)PythonRetrieval-Augmented Generation (Rag)Statistical Modeling
41 Minutes Ago
Hybrid
Seattle, WA, USA
171K-231K Annually
Entry level
171K-231K Annually
Entry level
Artificial Intelligence • Internet of Things • Semiconductor
Build SDKs, frameworks, reference applications, and evaluation tools for Physical AI systems operating across cloud, edge, and real-world hardware. Integrate AI models, inference runtimes, agent frameworks, and connected devices. Maintain development hardware fleets, improve platform security and reliability, document open-source tools, and collaborate with engineering, product, architecture, and industry partners.
Top Skills: Arm HardwareC++Ci/CdContainersEmbedded Single-Board ComputersExecutorchGoIot ProtocolsLinuxModel Context ProtocolOnnx RuntimePublish/Subscribe MessagingPythonPyTorchRos 2RpcRustVllm

What you need to know about the Seattle Tech Scene

Home to tech titans like Microsoft and Amazon, Seattle punches far above its weight in innovation. But its surrounding mountains, sprinkled with world-famous hiking trails and climbing routes, make the city a destination for outdoorsy types as well. Established as a logging town before shifting to shipbuilding and logistics, the Emerald City is now known for its contributions to aerospace, software, biotech and cloud computing. And its status as a thriving tech ecosystem is attracting out-of-town companies looking to establish new tech and engineering hubs.

Key Facts About Seattle Tech

  • Number of Tech Workers: 287,000; 13% of overall workforce (2024 CompTIA survey)
  • Major Tech Employers: Amazon, Microsoft, Meta, Google
  • Key Industries: Artificial intelligence, cloud computing, software, biotechnology, game development
  • Funding Landscape: $3.1 billion in venture capital funding in 2024 (Pitchbook)
  • Notable Investors: Madrona, Fuse, Tola, Maveron
  • Research Centers and Universities: University of Washington, Seattle University, Seattle Pacific University, Allen Institute for Brain Science, Bill & Melinda Gates Foundation, Seattle Children’s Research Institute

Sign up now Access later

Create Free Account

Please log in or sign up to report this job.

Create Free Account